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South African Journal of Botany 2004, 70(3): 393–406
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SOUTH AFRICAN JOURNAL
OF BOTANY
ISSN 0254–6299
Circumscription of Apiaceae tribe Oenantheae
TM Hardway1, K Spalik2, MF Watson3, DS Katz-Downie1 and SR Downie1*
1
Department of Plant Biology, University of Illinois, Urbana 61801, United States of America
Department of Plant Systematics and Geography, Warsaw University, Aleje Ujazdowskie 4, 00-478 Warsaw, Poland
3
Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland, United Kingdom
* Corresponding author, email: sdownie@life.uiuc.edu
2
Received 18 August 2003, accepted in revised form 17 November 2003
Previous molecular systematic investigations into the
higher-level relationships of Apiaceae subfamily
Apioideae have revealed a strongly supported clade
recognised as tribe Oenantheae Dumort. These plants
may have clusters of fibrous or tuberous-thickened
roots, corky-thickened fruits, and other adaptations for
existence in wet or aquatic habitats. In some species,
the leaves may be finely dissected or linear-septate and
much reduced. We have initiated collaborative studies
to produce a comprehensive estimate of phylogeny of
the tribe, but such investigations are thwarted because
information on the composition of the tribe is lacking.
Herein, tribe Oenantheae is circumscribed to include
the following genera: Afrocarum, Berula, Bifora (pro
parte), Cicuta, Cryptotaenia (pro parte), Cynosciadium,
Daucosma, Helosciadium, Lilaeopsis, Limnosciadium,
Neogoezia, Oenanthe, Oxypolis, Perideridia, Ptilimnium,
Sium, and Trepocarpus. Relationships inferred from
phylogenetic analyses of nuclear rDNA ITS sequences
from 64 accessions representing all 17 genera reveal
that four genera are not monophyletic. Bifora and
Cryptotaenia have members that fall outside of the tribe;
Berula and Sium each comprise two or more lineages
within Oenantheae. The St Helena endemics, Sium
bracteatum and S. burchellii, ally with African Berula
erecta; this clade is sister to the African endemic
species Sium repandum and Afrocarum imbricatum,
and this entire group is allied closely with north temperate Berula erecta. Nomenclatural changes are in
order, but must await further study. Representatives of
eight genera native to North America comprise a monophyletic group, and results from relative rate tests suggest that this lineage is evolving much faster than any
other major clade recognised within the tribe.
Introduction
In all higher-level molecular systematic studies of Apiaceae
subfamily Apioideae to date, whether based on chloroplast
DNA (cpDNA) restriction site comparisons or sequences
from the nuclear ribosomal DNA internal transcribed spacer
(ITS) region or several chloroplast loci, the ‘Oenanthe clade’
is revealed as a strongly supported monophyletic group (e.g.
Plunkett et al. 1996, Downie et al. 1998, 2000b, Plunkett and
Downie 1999). A core group of genera is recognised in many
of these studies, and includes Berula W.D.J. Koch, Cicuta
L., Cryptotaenia DC., Helosciadium W.D.J. Koch, Oenanthe
L., Oxypolis Raf., Perideridia Rchb., and Sium L. The distinctive genera Neogeozia Hemsl. and Lilaeopsis Greene,
whose affinities until recently were obscure, also belong
within this clade (Plunkett et al. 1996, Petersen et al. 2002).
The genera Cynosciadium DC., Limnosciadium Mathias and
Constance (1944–1945), and Ptilimnium Raf. may be included as well, based on their similar vegetative and (or) fruit
morphologies (Downie et al. 2000b, 2001). Thirteen genera
have been recognised unequivocally as belonging to the
Oenanthe clade.
The Oenanthe clade can be defined morphologically,
although there are no characters that are common and
unique to the group. Its members are characterised generally by having fascicled roots (which may be thickened and
bear tubers) and glabrous leaves and stems. They are often
associated with moist to wet habitats, and some are true
aquatics. Many species, including the members of Berula,
Neogoezia, Perideridia, and Sium, have pinnate leaves with
primary divisions that are not further divided and are often
rounded and of equal size, superficially resembling those
leaves of members of the distantly related genus Pimpinella
L. Species inhabiting moist to wet habitats, including representatives of Helosciadium, Sium, and Oenanthe, often
have submerged leaves that are more finely dissected and
have narrower lobes than those of the air-borne ones.
Leaves, particularly the petioles, are sometimes succulent
and the leaf lobes are reduced. In Berula, the lowest pair of
primary divisions is absent, whereas in Lilaeopsis and some
species of Oxypolis and Ptilimnium, all divisions are lacking
and their initial number may only be inferred from the nodes
(septae) extant on the leaf axis. The fruits of many members
are globose to broadly-ovate and are commonly
394
Hardway, Spalik, Watson, Katz-Downie and Downie
spongy/corky thickened, facilitating dispersal in water
(Affolter 1985, Wilm and Taft 1998). Indeed, Darwin (1859)
was impressed by the lengthy flotation and subsequent germination abilities of Helosciadium. Lilaeopsis and
Neogoezia have simple umbels, but this is an extremely rare
feature of Apiaceae subfamily Apioideae. However, none of
these attributes can be considered a synapomorphy for the
clade, as each of these features can be found in genera outside of the group (Petersen et al. 2002). This is not surprising, given the fact that many tribes and clades recognised in
subfamily Apioideae on the basis of molecular data cannot
be delimited unambiguously using morphological or anatomical data (Downie et al. 2001).
No prior taxonomic treatment has grouped together those
genera that are included here in the Oenanthe clade. In the
system of classification of Pimenov and Leonov (1993), modified from Drude (1898), the 13 genera recognised in the group
are distributed among three tribes (Apieae, Peucedaneae
Dumort., and Smyrnieae Spreng.). Downie et al. (2000b)
recognised this group as tribe Oenantheae Dumort., but
stressed that their circumscription of the tribe is radically different from that proposed by Dumortier (1827) and others, such
as Koso-Poljansky (1916) and Cerceau-Larrival (1962).
In this paper, we summarise the results of our efforts to
identify additional members of Apiaceae tribe Oenantheae.
We then report results of phylogenetic analyses of representatives of all genera comprising the tribe, placing emphasis on its African members, specifically the genera Berula,
Sium, and a new addition to the tribe, Afrocarum Rauschert.
Sequences of the ITS region were employed because they
have been shown to be appropriate to assess evolutionary
relationships within Apiaceae subfamily Apioideae (Downie
et al. 2001). Given that no previous classification has
grouped together those genera here recognised as constituting tribe Oenantheae, the results of this paper should
facilitate further systematic activity on this widely distributed
and strongly supported monophyletic group of Apiaceae.
Material and Methods
Taxonomic sampling
To ascertain the limits of Apiaceae tribe Oenantheae, ITS
sequence data were procured from 100 accessions of subfamily Apioideae using standard PCR and sequencing methods (described below). These accessions included representation of the 13 genera unambiguously placed in the tribe
as a result of earlier studies, plus Bifora americana (DC.)
Benth. & Hook., provisionally included in the tribe on the
basis of matK sequence comparisons (Plunkett et al. 1996).
These accessions also included representation of 19 additional genera (those listed in Table 1, plus Afrocarum,
Daucosma Engelm. & A. Gray ex A. Gray, and Trepocarpus
Nutt. ex DC.) whose morphologies (or previous taxonomic
placements, as indicated by their synonymies) suggested
possible close affinities with those taxa already included in
the tribe.
Sixty-four accessions were considered in the phylogenetic analysis (Table 2). The phylogenetic placement of the
African genus Afrocarum was ascertained by sampling putatively allied genera Berula and Sium (Cannon 1978), from
Africa and elsewhere. Sampling of the genus Helosciadium
was comprehensive (Wolff 1927, Z. Popper and M. Watson,
unpubl. data). For Lilaeopsis and the seven exclusively
North American taxa (i.e. Bifora americana, Cynosciadium,
Daucosma, Limnosciadium, Neogeozia, Ptilimnium and
Trepocarpus), only single exemplars of each genus were
included, as their phylogenetic relationships are the subject
of an ongoing, concurrent study (S. Downie et al., unpubl.
data). Sampling of the remaining genera (Cicuta,
Cryptotaenia, Oenanthe, Oxypolis and Perideridia) was
based primarily on material availability. With the exception of
Lilaeopsis, the nomenclatural type of each genus was
included in this study.
Table 1: Taxa examined for inclusion in Apiaceae tribe Oenantheae but excluded on the basis of phylogenetic analysis of molecular data
Genus
Chamaele Miq.
Crenosciadium Boiss. & Heldr. ex Boiss.
Cyclospermum Lag.
Huanaca Cav.
Lichtensteinia Cham. & Schltdl. pro parte
Muretia Boiss.
Naufraga Constance & Cannon
Niphogeton Schltdl.
Oreomyrrhis Endl.
Oreoschimperella Rauschert
Pimpinella L. pro parte
Pterygopleurum Kitag.
Pternopetalum Franch.
Sclerosciadium W.D.J. Koch ex DC. pro parte
Spuriopimpinella (H. Boissieu) Kitag.
Stoibrax Raf.
Species examined (and synonyms)
C. decumbens (Thunb.) Makino (=Sium decumbens Thunb.; Oenanthe decumbens
(Thunb.) Koso-Pol.)
C. siifolium Boiss. & Heldr. ex Boiss.
C. leptophyllum (Pers.) Sprague ex Britton & P. Wilson
H. andina Phil.
L. interrupta (Thunb.) Sond. (=Oenanthe interrupta Thunb.)
M. lutea (M. Bieb.) Boiss. (=Sium luteum (M. Bieb.) Spreng.)
N. balearica Constance & Cannon
N. ternata (Willd. ex Schltdl.) Mathias & Constance (=Apium montanum Kunth)
O. andicola (Kunth) Hook. f.
O. verrucosa (J. Gay ex A. Rich.) Rauschert (=Sium verrucosum J. Gay ex A. Rich.)
P. siifolia Leresche (=Apium siifolium (Leresche) Calest.)
P. diversifolia DC. (=Helosciadium pubescens DC.)
P. neurophyllum (Maxim.) Kitag. (=Perideridia neurophylla (Maxim) T.I. Chuang &
Constance; Sium neurophyllum (Maxim.) Hara)
P. vulgare (Dunn) Hand.-Mazz.
S. nodiflorum (Schousb.) Coss. (=Oenanthe nodiflora Schousb.)
S. calycina (Maxim.) Kitag.
S. dichotomum (L.) Raf. (=Apium dichotomum (L.) Calest.)
DNA No. or
Accession Taxon
Identifier
132
Afrocarum imbricatum (Schinz)
Rauschert
1444
Afrocarum imbricatum
82
Berula erecta (Huds.) Coville
116
Berula erecta
150
Berula erecta
251
Berula erecta
2253
Berula erecta
2257
Berula erecta
799
Berula erecta
1467
Bifora americana Benth. & Hook. f.
ex S. Watson
1923
Cicuta bulbifera L.
1935
Cicuta bulbifera
1113
Cicuta maculata L. var. angustifolia
Hook.
75
Cicuta virosa L.
131
Cicuta virosa
426
Cicuta virosa
817
Cryptotaenia canadensis (L.) DC.
574
Cryptotaenia japonica Hassk.
402
1063
2397
62449
170
64358
919
15108
1871
1870
1999
2000
Tanzania, Iringa, Mufindi District, Igowole, Kayombo & Kayombo 217 (MO)
AY360228
Malawi, Northern Province, Mzimba District, Mzuzu, Katoto, Pawek 5442 (MO)
Zimbabwe, Alpes Rd near Harare, Bayliss 10592 (MO)
Ethiopia, 90km S of Addis Ababa, Ash 859 (MO)
Germany; cult. UIUC from seeds obtained from Univ. Oldenburg Bot. Gard., Downie 150 (ILL)
France; cult. UIUC from seeds obtained from Conservatoire et Jardins botaniques de Nancy, Downie 251 (ILL)
Denmark, Sjælland, Sorø Sønderskov, Petersen GPL28
Denmark, Sjælland, near Tuel å, Seberg OSA 486
Ethiopia; cult. Univ. California Bot. Gard., Berkeley, L. Constance pers. coll. C-2453 (UC)
USA, Texas, Williamson Co., S of Jarrell, Nesom & Grimes 6415 (MO)
AY360229
AY353975 (ITS-1 only)
AY353976 (ITS-1 only)
U79607
U79605
AY360230
AY360231
U78369
AY360232
USA, Illinois, Will Co., Keepatau Forest Preserve, Taft 794 (ILLS)
Canada, Ontario, Rushing River Provincial Park, E of Kenora, Blanz & Jones 4750 (ILL)
USA, Wyoming, Goshen Co., Bear Creek, Nelson et al. 33517 (RM)
AY360233
AY360234
AY360235
Finland; cult. UIUC from seeds obtained from Univ. Joensuu Bot. Gard., Downie 75 (ILL)
Germany; cult. UIUC from seeds obtained from Univ. Oldenburg Bot. Gard., Downie 131 (ILL)
China, Yunnan, Xiao Zhongdian, RBGE Gyalthang Expedition, FED 426 (E)
USA, Illinois, Champaign Co., Urbana, Downie 817 (ILL)
Japan, Honshu Island, Koyosan area, McNamara et al. 90 (UC); cult. Univ. California Bot. Gard., Berkeley (no.
90.0891)
China; cult. UIUC from seeds obtained from Shanghai Bot. Gard., Downie 402 (ILL)
USA, Illinois, Jackson Co., Shawnee National Forest, Phillippe 21886 (ILLS)
USA, Texas, Kerr Co., Kerville, Heller 1943 (MO)
Spain, Balearic Islands, ex cult. Ville de Conservatoire botanique Mulhouse, France (E); cult RBGE (no.
19962449)
France, Corse, Musella; cult. Conservatoire botanique de la Ville de Mulhouse (no. 2048A), Herb. Reduron s.n.
U78372
U78372
AY353978, AY353985
U79613
U78367
Sicily, Messina, Davis & Sutton 64358 (E)
AF164822, AF164847
Jordan, Wadi Al-Yabis, along Jordan River, Lahham & El-Oqlah 18 (Yarmouk Univ. Herb.)
AF164823
Spain, Grenada, Charpin et al. AC15108 (E)
France, Vaucluse, Malaucène, Herb Reduron s.n.
France, Haut-Rhin, Luewenheim; cult. Conservatoire botanique de la Ville de Mulhouse (no. 9463), Herb. Reduron
s.n.
USA, Oregon, Douglas Co., East Gardiner, Hill & Dutton 32982 (ILLS)
AY353980, AY353987
AY360240
AY360241
USA, Illinois, Champaign Co., Champaign, Hill 30580 (ILLS)
AY360243
AY360236
AY360237
AY360238
AY353979, AY353986
AY360239
AY360242
395
Cryptotaenia japonica
Cynosciadium digitatum DC.
Daucosma laciniata Engelm. & A. Gray
Helosciadium bermejoi (L. Llorens)
Popper & M.F. Watson*
Helosciadium crassipes W.D.J. Koch
ex Rchb.
Helosciadium inundatum (L.) W.D.J.
Koch
Helosciadium nodiflorum (L.) W.D.J.
Koch
Helosciadium nodiflorum
Helosciadium nodiflorum
Helosciadium repens (Jacq.) W.D.J.
Koch
Lilaeopsis occidentalis J.M. Coult.
& Rose
Limnosciadium pinnatum (DC.)
Mathias & Constance
GenBank No.
Voucher Information
South African Journal of Botany 2004, 70: 393–406
Table 2: Plant accessions from which nuclear ribosomal DNA ITS sequences were obtained, with corresponding voucher information and GenBank reference numbers. Two GenBank numbers per accession indicate separate ITS-1 and ITS-2 sequences (with no intervening 5.8S data); a single GenBank number (unless otherwise indicated) indicates a contiguous ITS-1, 5.8S,
and ITS-2 sequence. Herbarium acronyms are according to Holmgren et al. (1990)
396
Table 2 cont.
DNA No. or
Accession Taxon
Identifier
2138
476
Neogoezia minor Hemsl.
Oenanthe banatica Heuff.
40
247
1300
165
1282
273
29
Oenanthe
Oenanthe
Oenanthe
Oenanthe
Oenanthe
Oenanthe
Oenanthe
521
915
1142
Oenanthe sarmentosa J. Presl ex DC.
Oxypolis fendleri (A. Gray) A. Heller
Oxypolis occidentalis J.M. Coult. &
Rose
Oxypolis rigidior (L.) J.M. Coult. &
Rose
Perideridia americana (Nutt. ex
DC.) Rchb.
Perideridia howellii (J.M. Coult. &
Rose) Mathias
Perideridia kelloggii (A. Gray)
Mathias
Perideridia kelloggii
1927
1938
780
855
635
778
2165
Perideridia kelloggii
Ptilimnium capillaceum (Michx.) Raf.
Sium bracteatum (Roxb.) Cronk
Sium bracteatum
Sium burchellii (Hook. f.) Hemsl.
Sium frigidum Hand.-Mazz.
Sium latifolium L.
Sium latifolium
Sium latifolium
Sium repandum Welw. ex Hiern
Sium sisarum L.
Sium sisarum
Sium sisarum
Sium sisarum
Sium sisarum
Sium suave Walter
Trepocarpus aethusae Nutt. ex DC.
GenBank No.
Mexico, Oaxaca, Sierra de San Felipe, Molseed 278 (ISU)
Hungary; cult. UIUC from seeds obtained from Hungarian Academy of Sciences Bot. Gard., Vácrátót, Downie 476
(ILL)
Spain; cult. UIUC from seeds obtained from Real Jardín Botánico, Downie 40 (ILL)
Belgium; cult. UIUC from seeds obtained from Jardin Botanique National de Belgique, Downie 247 (ILL)
Portugal, Madeira, Levado de Norte, Sunding s.n.; cult. RBGE (no. 19931141)
Hungary; cult. Univ. of Oldenburg Bot. Gard, Downie 165 (ILL)
Germany; cult. UIUC from seeds obtained from Karl-Marx Univ., Leipzig, Lee 24 (ILL)
Belgium; cult. UIUC from seeds obtained from Jardin Botanique National de Belgique, Downie 273 (ILL)
Germany; cult. UIUC from seeds obtained from Institut für Pflanzengenetik und Kulturpflanzenforschung,
Gatersleben, Downie 29 (ILL)
USA, California, San Mateo Co., Plunkett 1308 (WS)
USA, Colorado, Rio Blanco Co., Rough Creek, Vanderhorst 3759 (RM)
USA, California, El Dorado Co., Osgood Swamp, Follette s.n. (JEPS)
AY360244
AY360245
USA, Illinois, Vermillion Co., Windfall Hill Prairie Nature Preserve, Phillippe et al. 19411 (ILLS)
AY360255
USA, Illinois, Shelby Co., NE of Assumption, Shildneck 12868 (ILL)
AY246910
USA, California, Sonoma Co., Tin Barn Rd., Raiche 30482 (UC), cult. UC Bot. Gard., Berkeley (no. 83.1080)
AY246959
USA, California, Sonoma Co., 5 mi N. of Cazadero, Ornduff et al. s.n. (UC); cult. Univ. of California Bot. Gard. (no.
81. 0521)
USA, California, Alameda Co., Berkeley, Univ. of California Bot. Gard., Downie 635 (ILL)
USA, California, Sonoma Co., 5 mi N. of Cazadero, Ornduff et al. s.n. (UC); cult. Univ. of California Bot. Gard. (no.
81. 0521)
USA, Oklahoma, Rogers Co., Claremore, Jones 3030 (ILL)
St Helena, below Cuckhold’s Point on west side, Cronk 32 (E); ITS sequence supplied by J.C. Preston & Q.C.B. Cronk
St Helena; material provided by V. Williams s.n. (ILL)
St Helena; material provided by V. Williams s.n. (ILL)
China, Yunnan, Zhongdian County, Da Xu Shan, RBGE Gyalthang Expedition, FED 109 (E)
Denmark, N Sealand, Davis s.n. (E)
France, Bas-Rhin, Hultenheim, cult. Conservatoire botanique de la Ville de Mulhouse (no. 9466), Herb. Reduron s.n.
Denmark, Sjælland, Bromme Lillesø, Petersen & Seberg GPL31
South Africa, Transvaal, Kaapsche Hoop, Rogers 9101 (G)
Hungary; cult. UIUC from seeds obtained from Hungarian Academy of Sciences Bot. Gard., Vácrátót, Downie 97 (ILL)
France; cult. Jardin botanique de Caen, Downie 311 (ILL)
Canada, Montréal; cult. UIUC from seeds obtained from Jardin botanique de Montréal, Downie 388 (ILL)
Spain; cult. UIUC from seeds obtained from Real Jardín Botánico, Downie 53 (ILL)
Finland; cult. UIUC from seeds obtained from Univ. Joensuu Bot. Gard., Downie 83 (ILL)
Canada, Montréal; cult. UIUC from seeds obtained from Jardin botanique de Montréal, Downie 12 (ILL)
USA, Illinois, Alexander Co., Horseshoe Lake Conservation Area, Basinger 10891 (ILLS)
AY246962
AY360246
AY360247
AY360248
AY360249
AY360250
U78371
AY360251
AY360252
AY360253
AY360254
AY246961
U78373
AY360256
AY353981, AY353988
AY353982, AY353989
AY353983, AY353990
AF164842, AF164867
AY353984, AY353991
AY360257
AY360258
AY353977 (ITS-1 only)
U78370
AY360259
AY360260
AY360261
AY360262
AY360263
AY360264
Hardway, Spalik, Watson, Katz-Downie and Downie
177
178
109
E
1632
2256
61
97
311
388
53
83
12
1817
crocata L.
crocata
divaricata (R. Br.) Mabb.
fistulosa L.
peucedanifolia Pollich
pimpinelloides L.
pimpinelloides
Voucher Information
South African Journal of Botany 2004, 70: 393–406
Methods
Details of the DNA extractions, PCR amplifications and
purifications, and DNA sequencing are the same as provided elsewhere (Downie and Katz-Downie 1996, Downie et al.
1998, Hardway 2001). For most accessions, total genomic
DNA was obtained from about 20mg of dried, leaf tissue
using the Dneasy Plant Mini Kit (Qiagen Inc. Valencia,
California). For the remaining accessions, the modified
CTAB protocol described by Doyle and Doyle (1987) was
used. The purified DNAs were PCR-amplified using primers
‘ITS4’ and ‘ITS5’ (White et al. 1990). Twenty-two complete
ITS sequences were obtained through manual sequencing,
using the dideoxy chain termination method using
Sequenase (version 2.0, United States Biochemical
Corporation, Cleveland, Ohio), with a-35S-dATP as the labeling agent. Modifications to the sequencing protocol included
denaturation of the DNA by boiling the DNA/primer/
acetamide mix for 4min, followed by snap-chilling the
annealing mixture for 3min in an ice water bath. Both PCR
primers, and primers ‘ITS2’ and ‘ITS3’ (described in White et
al. 1990, including modifications by Downie and KatzDownie 1996), were used in manual sequencing reactions.
Cycle sequencing reactions, using primers ‘ITS4’ and ‘ITS5’,
were performed on all remaining purified PCR products
using AmpliTaq DNA polymerase and fluorescent dyelabeled terminators (ABI Prism BigDye terminator vers. 3.0
Ready Reaction Cycle Sequencing Kit — Applied
Biosystems, Foster City, California). Sequencing products
were resolved by electrophoresis using Applied Biosystem’s
377A automated DNA sequencer. All ITS sequences have
been deposited in GenBank, as either separate ITS-1 and
ITS-2 sequences or contiguous ITS-1, 5.8S, ITS-2 data
(Table 2). For twelve accessions, sequences from 5.8S
rRNA were unavailable, owing to the sequencing methods
used to obtain these data. For three of these twelve accessions (Berula erecta nos. 82 and 116, and Sium repandum
no. 61), sequence data were also unavailable for ITS-2,
despite our repeated but unsuccessful efforts to PCR-amplify this region. Uncorrected pairwise nucleotide differences
were determined using PAUP* version 4.0 (Swofford 1998),
as they are commonly provided in other angiosperm studies
(e.g. Baldwin et al. 1995).
Data analysis
The DNA sequences were aligned using CLUSTAL X
(Jeanmougin et al. 1998). However, given the many small
length differences observed among the sequences (particularly for those eight genera comprising the ‘North American
(NA) Endemics’ clade, discussed below), a variety of costs
for gap opening and gap extension was utilised. As a result
of these different alignment parameters, the relative positions of several genera within the ‘NA Endemics’ clade
changed, as did the position of this clade relative to the genera Cicuta, Oenanthe, and Oxypolis, when analysed using
maximum parsimony. Such changes in tree topologies
reflecting different cost matrices have been reported previously for Oenantheae (Petersen et al. 2002). We settled on
using the default parameters of CLUSTAL X (specifically,
397
gap opening penalty = 15, and gap extension = 6.66), and
reiterate that one of the major goals of this paper is to identify those genera comprising tribe Oenantheae, rather than
elucidate all intergeneric relationships (particularly among
the taxonomically problematic North American members of
the group). The latter will be achieved in subsequent studies, by increasing the sampling of species and incorporating
data from the more conservatively evolving chloroplast
genome. Moreover, the relationships among Berula,
Afrocarum, and the African Sium species, the second major
goal of this paper, did not change upon consideration of different gap costs. Relative rate tests, using the method of
Robinson et al. (1998), were implemented using the program RRTree version 1.1 (Robinson-Rechavi and Huchon
2000) to detect rate asymmetries of the ITS regions among
taxa in tribe Oenantheae. The proportions of site differences
were estimated using the two-parameter distance of Kimura
(1980).
The resulting data matrix was first analysed using maximum parsimony (MP), with gap states treated as missing
data. Characters were treated as unordered and all character transformations were weighted equally. Heuristic MP
searches were replicated 1 000 times with random stepwise
addition of taxa, Tree-Bisection-Reconnection (TBR) branch
swapping, and saving Multiple Trees (MulTrees). Bootstrap
values were calculated from 1 000 replicate analyses using
TBR branch swapping and simple stepwise addition of taxa.
The number of additional steps required to force particular
taxa into a monophyletic group was examined using the
constraint option of PAUP*. The ITS data were analysed as
separate ITS-1, 5.8S, and ITS-2 regions, and combined.
However, not all data sets were equivalent in their number of
terminal taxa, as 5.8S and ITS-2 sequences were unavailable for twelve and three accessions, respectively. To examine the extent of conflict among the ITS-1 and ITS-2 data
sets, the incongruence length difference test of Farris et al.
(1995) was implemented using PAUP*’s partition-homogeneity test. The test was performed with 100 replicates,
using the heuristic search option with simple addition of
taxa, and TBR branch swapping. The complete data matrix
was then analysed using maximum likelihood, after using
the program Modeltest vers. 3.06 (Posada and Crandall
1998) to select an appropriate model of DNA substitution
and to estimate its parameters. A heuristic search using random addition sequence and TBR branch swapping was
implemented using PAUP*. One thousand bootstrap replicate analyses were conducted using neighbour-joining
searches with ML distance, using the ML parameters
inferred by Modeltest.
All trees were rooted with Perideridia. The results of previous systematic investigations of Apiaceae subfamily
Apioideae based on a variety of molecular evidence reveal
that the North American genus Perideridia is sister taxon to
all other members of the tribe (Plunkett et al. 1996, Downie
et al. 1998, 2000a, 2000b). In many studies, the Komarovia
clade and tribe Pleurospermeae occur basal to tribe
Oenantheae (Downie et al. 2001), rooting the trees with
either Komarovia or Pleurospermum maintained Perideridia
as sister taxon to all other Oenantheae genera and did little
to affect ingroup tree topology (Hardway 2001).
398
Hardway, Spalik, Watson, Katz-Downie and Downie
Circumscription of Oenantheae. Phylogenetic analysis of
ITS sequences from 100 accessions, representing the 13
core genera of Oenantheae and 19 additional genera examined for possible inclusion in the tribe, resulted in the expansion of tribe Oenantheae by three genera (Afrocarum,
Daucosma, and Trepocarpus). Representatives of the 16
remaining genera (Table 1) all fall outside of the tribe; the
phylogenetic affinities of each will be discussed in a subsequent paper (K. Spalik and S. Downie, unpubl. data). Bifora
americana, the only North American member of the genus,
is confirmed as belonging to tribe Oenantheae; its congeners, B. radians M. Bieb. and B. testiculata (L.) Spreng. ex
Schult., are placed in the apioid superclade (Downie et al.
2001). Similarly, the genus Cryptotaenia is polyphyletic, with
C. africana Drude, C. calycina C.C. Towns., and C. elegans
Webb ex Bolle placed outside of tribe Oenantheae, away
from C. canadensis (L.) DC. and C. japonica Hassk., which
are maintained in the tribe (K. Spalik and S. Downie, unpubl.
data). The nomenclatural type of Cryptotaenia (C. canadensis) is included in Oenantheae, whereas the type of Bifora
(B. testiculata) is not. In summary, 17 genera are recognised
herein as constituting tribe Oenantheae.
Sequence analysis
Alignment of 64 ITS sequences, representing all 17 genera
of tribe Oenantheae, resulted in a matrix of 633 positions,
with three positions near the ITS-2–26S rRNA boundary
excluded because of alignment ambiguity. Characteristics of
these aligned data, as separate or combined ITS-1, 5.8S,
and ITS-2 regions, are presented in Table 3. Fifty-eight
unambiguous gaps, all but one ranging between one and
three bp in size, were introduced to facilitate alignment. The
remaining and largest gap, of 19 bp in size, characterised all
accessions of Helosciadium. Of these 58 gaps, single bp
deletions (relative to the Perideridia sequences) were most
numerous (27), followed by single bp insertions (16) and two
bp insertions (8; Figure 1). Half of these 58 gaps were
restricted to sequences from the eight species comprising
the ‘NA Endemics’ clade (discussed below). A total of 31
gaps was parsimony informative; these were distributed
almost equally between both spacer regions. Treating gaps
as missing data, uncorrected pairwise sequence divergence
values across the entire region ranged from identity (for
several conspecific taxa) to 26.9% of nucleotides (between
Lilaeopsis occidentalis and Helosciadium inundatum). The
vast majority of pairwise comparisons ranged between 6%
and 14%, whereas the highest divergence values were
obtained among pairwise comparisons of sequences from
the eight ‘NA Endemics.’ For the latter, these values ranged
between 5.7% and 20.5% (and averaged 17%).
Phylogenetic analysis
MP analysis of combined ITS-1, 5.8S, and ITS-2 sequence
data for 64 accessions of Apiaceae tribe Oenantheae resulted in 256 minimal length trees, each of 999 steps
(Consistency Indices (CI’s) = 0.5315 and 0.4846, with and
without uninformative characters, respectively; Retention
40
N um ber ofgaps
Results
30
Insertion
D eletion
20
10
1 2 3
19
Size ofgaps (bp)
Figure 1: The number of gaps and their sizes inferred in the alignment of 64 ITS sequences of Apiaceae tribe Oenantheae. The number of insertions relative to deletions is indicated
Table 3: Comparisons among the data sets and most parsimonious (MP) trees presented in this study. The number of terminal taxa varied,
for 5.8S and ITS-2 data were unavailable for 12 and 3 accessions, respectively
Data Set Characteristics and Cladogram Measures
No. of terminals
Length variation (bp)
No. of aligned positions
No. of aligned positions excluded
No. of aligned positions constant
No. of aligned positions autapomorphic
No. of aligned positions parsimony informative
No. of unambiguous alignment gaps
No. of alignment gaps parsimony informative
Pairwise sequence divergence (range in %)
No. of MP trees
Length of MP trees
Consistency index
Consistency index (excluding uninformative chars.)
Retention index
ITS–1
64
208–213
224
0
84
32
108
27
15
0–26.4
1 376
432
0.5231
0.4824
0.7832
5.8S
52
161–164
164
0
146
8
10
4
3
0–4.4
>5 000
27
0.7037
0.5789
0.8889
ITS–2
61
207–232
245
3
66
40
136
27
13
0–32.4
348
510
0.5608
0.5141
0.7887
Combined
64
580–606
633
3
296
80
254
58
31
0–26.9
256
999
0.5315
0.4846
0.7752
South African Journal of Botany 2004, 70: 393–406
399
74
68
77
95
62
89
99
100
71
100
98
99
100
99
82
100
69
100
99
99
100
100
100
100
42
96
81
60
88
90
32
94
48
75
99
63
32
92
100
98
71
100
71
Berula erecta 82
Berula erecta 116
Berula erecta 799
Sium bracteatum
Sium bracteatum 177
Sium burchellii 178
Afrocarum imbricatum 132
Afrocarum imbricatum 1444
Sium repandum 61
Berula erecta 150
Berula erecta 2257
Berula erecta 2253
Berula erecta 251
Helosciadium nodiflorum 919
Helosciadium nodiflorum 15108
Helosciadium nodiflorum 1871
Helosciadium bermejoi 62449
Helosciadium repens 1870
Helosciadium inundatum 64358
Helosciadium crassipes 170
Sium sisarum 97
Sium sisarum 311
Sium sisarum 388
Sium sisarum 83
Sium sisarum 53
Sium frigidum 109
Sium latifolium E
Sium latifolium 1632
Sium latifolium 2256
Sium suave 12
Cryptotaenia japonica 402
Cryptotaenia japonica 574
Cryptotaenia canadensis 817
Oenanthe pimpinelloides 273
Oenanthe pimpinelloides 29
Oenanthe banatica 476
Oenanthe fistulosa 165
Oenanthe peucedanifolia 1282
Oenanthe divaricata 1300
Oenanthe crocata 40
Oenanthe crocata 247
Oenanthe sarmentosa 521
Limnosciadium pinnatum 2000
Daucosma laciniata 2397
Ptilimnium capillaceum 2165
Cynosciadium digitatum 1063
Lilaeopsis occidentalis 1999
Trepocarpus aethusae 1817
Bifora americana 1467
Neogoezia minor 2138
Cicuta virosa 131
Cicuta virosa 75
Cicuta virosa 426
Cicuta maculata var. angustifolia 1113
Cicuta bulbifera 1923
Cicuta bulbifera 1935
Oxypolis occidentalis 1142
Oxypolis rigidior 1927
Oxypolis fendleri 915
Perideridia kelloggii 855
Perideridia kelloggii 635
Perideridia kelloggii 778
Perideridia americana 1938
Perideridia howellii 780
“Berula”
Helosciadium
Sium
Cryptotaenia
Oenanthe
“NA Endemics”
Cicuta
Oxypolis
Perideridia
Figure 2: Strict consensus of 256 maximally parsimonious 999-step trees derived from equally weighted maximum parsimony analysis of
aligned ITS-1, 5.8S, and ITS-2 sequences from 64 accessions of Apiaceae tribe Oenantheae (CI = 0.4846, excluding uninformative characters; RI = 0.7752). Numbers on branches represent bootstrap percentage estimates from 1 000 replicate analyses. Brackets indicate clade
descriptors discussed in the text
400
Index (RI) = 0.7752 (Table 3). The strict consensus of these
trees is presented in Figure 2. Separate MP analyses of the
ITS-1 and ITS-2 data sets resulted in strict consensus trees
(not shown) slightly less resolved but highly consistent with
the strict consensus tree derived from combined data. The
results of the partition-homogeneity test revealed that the
two spacer regions do not yield significantly different phylogenetic estimates. Separate analysis of the 5.8S region
resulted in a large polytomy, with only the group of eight ‘NA
Endemic’ genera resolved as monophyletic. Greatest resolution of relationships was achieved when all molecular data
were considered together, a result concordant to that reported from other studies of ITS data (Baldwin et al. 1995). Of
the 31 potentially informative alignment gaps, 16 mapped
without homoplasy when optimised on all minimal length
trees. The largest gap, restricted to all Helosciadium
sequences, was a 19bp deletion relative to the outgroup
Perideridia. Other synapomorphic indels supported the
monophyly of the genera Cicuta, Cryptotaenia pro parte (i.e.
C. canadensis and C. japonica), Oxypolis, and Perideridia,
and the species groups Sium bracteatum + Sium burchellii,
Afrocarum imbricatum + Sium repandum, Sium latifolium +
Sium suave, and Trepocarpus aethusae + Bifora americana.
On the basis of these results, the genera Helosciadium,
Cryptotaenia pro parte (as above), Oenanthe, Cicuta,
Oxypolis, and Perideridia constitute well-diagnosed groups,
with supporting bootstrap values ranging between 92% and
100% and the possession of uniquely occurring indels. The
genera Berula and Sium are not monophyletic. The two St
Helena endemics (Sium bracteatum and S. burchellii) ally
with the three Berula accessions from Africa (nos. 82, 116,
and 799). This clade is sister to Afrocarum imbricatum +
Sium repandum, two species also native to Africa, which, in
turn, comprise a clade sister to the four accessions of
European Berula examined (nos. 150, 251, 2253, and
2257). This entire clade, labeled ‘Berula’, comprising
Afrocarum, Berula and the three Sium species endemic to St
Helena and continental Africa, is supported strongly, with a
bootstrap value of 100%. Sium sisarum (five accessions) +
S. frigidum and Sium latifolium (three accessions) + S.
suave comprise two distinct clades arising from a fivebranched polytomy, along with the ‘Berula’ clade,
Helosciadium, and Cryptotaenia (pro parte).
Constraining the seven examined accessions of Berula
erecta to monophyly and rerunning the MP analysis resulted
in trees three steps longer than those most parsimonious.
Constraining the ten non-African Sium accessions to monophyly (i.e. Sium sisarum, S. frigidum, S. latifolium, and S.
suave) revealed a subset (224) of the 256 minimal length
999-step trees resulting from unconstrained analysis.
Constraining all 14 Sium accessions to monophyly (including the African Sium bracteatum, S. burchellii and S. repandum) resulted in trees 26 steps longer than those most parsimonious. Based on these results, it is very unlikely that the
genus Sium, as presently circumscribed to include the three
African species, is monophyletic. In contrast, Berula erecta
may prove to be monophyletic upon subsequent study and
expanded sampling, given the many weakly supported internal branches in this portion of the tree.
The last major clade in the MP tree, labeled ‘NA
Hardway, Spalik, Watson, Katz-Downie and Downie
Endemics’, comprises eight species native to North America.
The genera Cynosciadium, Daucosma, Limnosciadium,
Ptilimnium, and Trepocarpus are found exclusively in the
USA, as is Bifora americana. Neogoezia is endemic to
Mexico (Constance 1987). Lilaeopsis occidentalis is almost
entirely confined to the Pacific coast of North America,
whereas the genus itself is distributed more widely in the
temperate regions of North and South America, with a few
outlying species in Australasia and elsewhere (Affolter 1985,
Petersen and Affolter 1999). While we refer to this group as
the ‘NA Endemics’ clade, we acknowledge that there are
taxa outside of the clade that are also endemic to North
America (such as Oxypolis, Perideridia, and all but one
species of Cicuta). We also acknowledge that very few
species of Lilaeopsis are actually native to North America.
Therefore, we use the descriptor ‘NA Endemics’ for the sake
of reference only.
Based on the results of the hierarchical likelihood ratio
tests, Modeltest selected the TrN+G model of nucleotide
substitution (Tamura and Nei 1993) as fitting these ITS data
best (base frequencies: 0.2416, A; 0.2258, C; 0.2446, G;
0.2879, T; estimates of substitution rates: A↔C, 1; A↔G,
2.1879; A↔T, 1; C↔G, 1; C↔T, 4.4819; G↔T, 1; proportion
of invariable sites = 0; gamma distribution shape parameter
= 0.5083). Using these parameters, a single tree was recovered in PAUP*, with a –Ln likelihood score of 5805.7183
(Figure 3). A tree with identical topology (with a –Ln likelihood score of 5792.08846) was recovered using the best-fit
model GTR+I+G (Rodríguez et al. 1990; proportion of invariable sites = 0.2017; gamma distribution shape parameter =
0.8653), selected by Modeltest’s Akaike information criterion
(Akaike 1974). The results of the ML analyses are similar to
those inferred by MP, with the following exceptions:
Oenanthe and Cicuta arise as weakly supported sister taxa;
the ten non-African Sium accessions (Sium sisarum, S.
frigidum, S. latifolium, and S. suave) unite as a weakly supported monophyletic group (with a 66% bootstrap value);
and decreased internal support within the ‘Berula’ clade,
including the near collapse of the branch uniting African
Berula, Sium, and Afrocarum. The latter clade, however, is
still supported strongly, with a 100% bootstrap value.
The presence of a five-branched polytomy in the MP tree,
the many weakly supported or short basal branches in both
MP and ML trees, and the rearrangement of certain taxa in
the ‘NA Endemics’ clade depending upon the gap penalties
invoked in generating the alignment, generally preclude
unambiguous hypotheses of intergeneric relationship within
tribe Oenantheae. Those relationships that are noteworthy
include the union of Afrocarum with Sium repandum, the
close affinity between the jellicos (i.e. Sium bracteatum and
S. burchellii) of St Helena and African Berula, and the isolation of African Sium from its north temperate congeners,
such as Sium latifolium, the nomenclatural type of the
genus.
A striking feature of the ITS trees is the relatively long
branch lengths characterising the members of the ‘NA
Endemics’ clade, as seen in Figure 3. Sequence divergence
values among the eight members comprising this clade are
approximately 6–7 times higher (averaging 17%) relative to
those within Cicuta (averaging 2.4%) or Oenanthe (averag-
South African Journal of Botany 2004, 70: 393–406
401
Sium sisarum 97
Sium sisarum 311
0.01 substitutions/site
Sium sisarum 388
80
Sium sisarum 83
Sium sisarum 53
Sium
66
Sium frigidum 109
100 Sium latifolium E
Sium latifolium 1632
97
Sium latifolium 2256
Sium suave 12
Helosciadium nodiflorum 919
Helosciadium nodiflorum 15108
Helosciadium nodiflorum 1871
Helosciadium
Helosciadium bermejoi 62449
100
Helosciadium repens 1870
Helosciadium inundatum 64358
Helosciadium crassipes 170
54
69 Berula erecta 82
Berula erecta 116
60
Berula erecta 799
89 Sium bracteatum
Sium bracteatum 177
Sium burchellii 178
“Berula”
Afrocarum imbricatum 132
94
61
Afrocarum imbricatum 1444
100
Sium repandum 61
Berula erecta 2257
Berula erecta 2253
96
Berula erecta 150
Berula erecta 251
97 Cryptotaenia japonica 402
97
Cryptotaenia
Cryptotaenia japonica 574
Cryptotaenia canadensis 817
Oenanthe pimpinelloides 273
100 Oenanthe pimpinelloides 29
Oenanthe banatica 476
Oenanthe fistulosa 165
Oenanthe
Oenanthe peucedanifolia 1282
100
Oenanthe sarmentosa 521
100 Oenanthe divaricata 1300
Oenanthe crocata 40
Oenanthe crocata 247
virosa 131
100 Cicuta
Cicuta virosa 75
Cicuta virosa 426
98
Cicuta
Cicuta maculata var. angustifolia 1113
98 Cicuta bulbifera 1923
Cicuta bulbifera 1935
92
Limnosciadium pinnatum 2000
67
Daucosma laciniata 2397
84
Ptilimnium capillaceum 2165
96
“NA
Cynosciadium digitatum 1063
Endemics”
Lilaeopsis occidentalis 1999
89
51 96
Trepocarpus aethusae 1817
Bifora americana 1467
Neogoezia minor 2138
64
Oxypolis occidentalis 1142
99
Oxypolis rigidior 1927
Oxypolis
Oxypolis fendleri 915
Perideridia kelloggii 855
100
Perideridia kelloggii 635
79
Perideridia
Perideridia kelloggii 778
Perideridia americana 1938
Perideridia howellii 780
94
Figure 3: The single tree derived from maximum likelihood analysis of aligned ITS-1, 5.8S, and ITS-2 sequences from 64 accessions of
Apiaceae tribe Oenantheae under a TrN+G model of nucleotide substitution (–Ln likelihood = 5805.7183). Numbers on branches represent
bootstrap estimates for 1 000 replicate neighbor-joining analyses using a maximum likelihood model of nucleotide substitution; bootstrap percentage estimates <50% are not indicated. Brackets indicate clade descriptors discussed in the text
402
ing 2.8%), their putative sister taxa. Moreover, half of the 58
gaps inferred in the multiple alignment of all 64 ITS
sequences were restricted to members of the ‘NA Endemics’
clade, as was the single small region of ambiguous alignment near the ITS-2–26S rRNA boundary excluded from the
analysis. To detect rate asymmetry, 28 relative rate tests
were conducted. Twelve sequences were assigned to nine
defined lineages (representing one sequence from each of
the nine major clades outlined in Figures 2–3, with the
exception of the ‘NA Endemics’ clade, where four sequences
were assigned). Perideridia kelloggii (no. 635) was used as
the reference taxon (outgroup). Significant differences (P =
0.001) suggest that Limnosciadium, Ptilimnium, Lilaeopsis,
and Neogoezia, the four examined sequences from the ‘NA
Endemics’ clade, are each evolving much faster when compared to any sequence from outside of this clade. Rate differences of most other pairs of species were not statistically
significant (at the 5% level). The molecular clock hypothesis
for Oenantheae ITS sequences is therefore rejected.
Discussion
The circumscription and distribution of Apiaceae tribe
Oenantheae
Table 4 lists the 17 genera recognised here as comprising
tribe Oenantheae and their distributions. Four genera are
not monophyletic. Bifora and Cryptotaenia have members
that fall outside of the tribe; Berula and Sium each comprise
two or more lineages within Oenantheae. The separation of
Bifora americana from its Eurasian congeners, B. radians
and B. testiculata, the latter the nomenclatural type of the
genus, involves a change in nomenclature. The name
Hardway, Spalik, Watson, Katz-Downie and Downie
Atrema americana DC. already exists for these North
American plants, but further study of North American
Oenantheae is in order before such a change is implemented. The type of Cryptotaenia, C. canadensis, is maintained
within the tribe, as is C. japonica; the latter, however,
depending upon the treatment, may be recognised as a
variety or subspecies of the former. Two African species of
Cryptotaenia (C. africana and C. calycina) and the
Macaronesian C. elegans, coinciding with Wolff’s (1927)
section Afrosciadium, are excluded from the tribe.
Information on their phylogenetic placements is forthcoming
(K Spalik and S Downie, unpubl. data).
The western North American monotypic genus
Shoshonea Evert & Constance, erroneously placed in the
Oenanthe clade on the basis of matK sequence comparisons (Plunkett et al. 1996), belongs in the ‘Angelica’ clade
of the apioid superclade (Downie et al. 1998, 2001, Plunkett
and Downie 1999). These plants are caespitose-pulvinate,
scaberulous, and possess a woody taproot, and are morphologically similar to several other genera of the region
(Downie et al. 2002). They are also restricted to exposed
calcareous outcroppings at high elevations (Evert and
Constance 1982). Any of these features would make this
genus an anomaly, if it was maintained in tribe Oenantheae.
The matK study of Plunkett et al. (1996) also placed Cicuta
(specifically, C. douglasii (DC.) J.M. Coult. & Rose) in the
Angelica clade, alongside three genera of North American
distribution having affinities with Shoshonea (Downie et al.
2002). The genus Cicuta is unequivocally monophyletic (C.
Lee and S. Downie, unpubl. data), and its position outside of
tribe Oenantheae should be regarded as spurious.
Nine genera are native to North America (six exclusively to
the USA), of which five are monotypic or bitypic. Three
Table 4: The composition and distribution of Apiaceae tribe Oenantheae Dumort. Species numbers are after Pimenov and Leonov (1993),
except for Berula (Burtt 1991), Cicuta (Mulligan 1980), Cynosciadium (Mathias and Constance 1944-1945), Helosciadium (Wolff 1927; Z
Popper and M Watson, unpubl. data), and Lilaeopsis (Affolter 1985, Petersen and Affolter 1999). Asterisks denote those genera that are not
monophyletic as a result of this study
Genus
Afrocarum Rauschert
Berula W.D.J. Koch*
Bifora Hoffm.*
Cicuta L.
Cryptotaenia DC.*
Cynosciadium DC.
Daucosma Engelm. & A. Gray ex A. Gray
Helosciadium W.D.J. Koch
Lilaeopsis Greene
Limnosciadium Mathias & Constance
Neogoezia Hemsl.
Oenanthe L.
Oxypolis Raf.
Perideridia Rchb.
Ptilimnium Raf.
Sium L.*
Trepocarpus Nutt. ex DC.
a
No. of Species
1
1
1a
4
2b
1
1
5
14
2
5
40
7
13
5
14
1
Distribution
Africa
Widespread
North America (USA)
3 NA; 1 Circumboreal
Widespread
North America (USA)
North America (USA)
Europe
New World, Australasia
North America (USA)
Mexico
Widespread
North America
North America
North America (USA)
Widespread
North America (USA)
Bifora americana (=Atrema americana DC.). Bifora radians and B. testiculata are excluded from tribe Oenantheae
Cryptotaenia canadensis and C. japonica. Cryptotaenia africana, C. calycina, and C. elegans are excluded from tribe Oenantheae. The phylogenetic placements of C. flahaultii Koso-Pol., C. polygama C.C. Towns., and C. thomasii (Ten.) DC. have yet to be determined
b
South African Journal of Botany 2004, 70: 393–406
403
species of Cicuta are also confined to North America, whereas C. virosa is circumboreal (Mulligan 1980). Afrocarum is
endemic to tropical Africa, and Helosciadium is European in
distribution. Lilaeopsis occurs in the temperate zones of
North and South America and Australasia (Affolter 1985), as
well as in Mauritius in the southwest Indian Ocean (Petersen
and Affolter 1999). The remaining four genera are widely distributed, occurring in Europe, Asia, Africa, North America
and, depending upon which genus, also in Central America,
Australia and Australasia (Pimenov and Leonov 1993).
Moreover, at least four new name combinations will be necessary. Another approach, equally unwieldy, is to recognise
Afrocarum, Sium repandum, the St Helena endemics, and
African Berula as separate genera. With the exception of the
latter, each can be circumscribed unequivocally because of
their distinctive morphology, but this leads to the creation of
several monotypic genera, of which there are already far too
many in the family (Spalik et al. 2001). However, before any
such nomenclatural changes are implemented, further sampling and study are required, especially of Berula erecta.
The ‘Berula’ clade
The ‘NA Endemics’ clade
A well-supported clade in all trees (the ‘Berula’ clade) contains Berula erecta, Afrocarum imbricatum, Sium bracteatum, S. burchellii, and S. repandum. Burtt (1991) recognised
two subspecies within Berula erecta, and established subsp.
thunbergii (DC.) B.L. Burtt ‘with some reluctance’. These two
subspecies are separated by the severity of cutting of the
leaflets of the cauline leaves, with subsp. thunbergii having
a more regular and less deeply dentate cutting than that of
the typical subspecies. Moreover, subsp. erecta, although
distributed widely in temperate Eurasia, North America, and
elsewhere, does not occur in southern Africa (Burtt 1991).
Geographic distribution aside, we could not satisfactorily distinguish between these subspecies, because one of our
accessions from Africa had a jagged leaflet morphology just
like European Berula. Nevertheless, it is intriguing that the
African accessions of Berula erecta comprise a distinct
clade, separate from their European counterparts.
Therefore, while our results show that subsp. thunbergii may
be a distinct taxon, the diagnostic characters used to distinguish it from the typical subspecies appear to be incorrect.
The jellicos of St Helena, Sium bracteatum and S. burchellii, unite as a monophyletic group sister to the three African
Berula accessions. In both MP and ML trees, this entire
group is sister to the clade of Afrocarum imbricatum and
Sium repandum, suggesting that the St Helena endemics
originated from Africa and shared an immediate common
ancestor with African Berula. The four examined accessions
of B. erecta from Europe comprise a strongly supported
monophyletic group sister to the clade of all other aforementioned taxa. This alliance among Berula, Sium, and
Afrocarum is not surprising. Berula and Sium are morphologically very similar and, in many early systems of classification, were treated as congeneric. The genus Afrocarum
resembles Sium in several attributes (Cannon 1978),
although it is generally, but erroneously, affiliated with
Carum, under which it was first described (Cannon 1978,
Townsend 1989). It is also intriguing that the jellicos of St
Helena and Sium repandum are not immediately allied to
their north-temperate congeners, such as Sium latifolium,
the nomenclatural type of the genus.
The phylogenetic results presented here indicate that
nomenclatural changes are in order, especially with regard
to the monotypic genera Afrocarum and Berula vis-à-vis
Sium. One approach is to redefine Berula to include
Afrocarum, Sium repandum, and the two St Helena Sium
species, but this leads to a complex genus that, pending further study, cannot readily be circumscribed morphologically.
Based on ITS sequence data, all members of the ‘NA
Endemics’ clade show a high level of sequence divergence,
and relative rate tests suggest that this lineage is evolving
much faster than any other within the tribe. This rapid divergence parallels their great morphological diversity. For
example, many members of this clade (including the genus
Lilaeopsis) exhibit a severe reduction of leaf morphology
(Affolter 1985). Others, such as Bifora americana and
Trepocarpus, have pinnately decompound leaves with filiform divisions. Their distinctive morphology has confused
phylogenetic placement; as examples, Neogoezia and
Lilaeopsis, with their simple umbels, have been treated in
both subfamilies Apioideae and Hydrocotyloideae (reviewed
in Constance 1987, and Peterson et al. 2002). Further study
of the ‘NA Endemics’ clade is currently underway.
Taxonomic history
The taxonomic history of tribe Oenantheae Dumort. (as
emended by Downie et al. 2000b and expanded upon here)
is extraordinarily complex, especially because of the use of
many longstanding names in earlier works that are now considered as synonyms. Sprengel (1820), proposing the first
formal (i.e. tribal) subdivisions of subfamily Apioideae,
placed Cicuta in tribe Smyrnieae Spreng., Sium in tribe
Ammieae Spreng., and Oenanthe in tribe Pimpinelleae
Spreng. Koch (1824), emphasising features of the seed face
(endosperm) and mericarp ribs, moved Oenanthe into tribe
Seseleae W.D.J. Koch and Cicuta into tribe Ammieae to join
Sium, Helosciadium, and Drepanophyllum Hoffm. (the latter
two genera being segregates of Sium). Dumortier (1827)
refined Koch’s treatment by placing Cicuta, Helodium
Dumort. (= Helosciadium), and Sium in tribe Pimpinelleae
subtribe Cicutinae Dumort. on the basis of the presence of
flat endosperm and calyx teeth. In the same publication,
Dumortier described the new tribe Oenantheae for the genera Aethusa L., Coriandrum L., and Oenanthe, defined by
the presence of radiately ribbed fruits. This rather heterogeneous assemblage of genera was not followed by later
authors, nor is it supported by molecular studies.
De Candolle (1830), following Koch’s emphasis on the
shape of the endosperm, as well as the distribution of vittae
and other fruit anatomical characters, treated Cicuta,
Helosciadium, and Sium (incl. Berula) in tribe Ammieae. He
also included in this tribe, along with 18 other genera, his
newly described Cryptotaenia DC. and Discopleura DC., the
latter now treated in Ptilimnium. Oenanthe (including
404
Dasyloma DC.) and Cynosciadium were placed in Seseleae,
with this tribe distinguished from Ammieae on the basis of
the degree and direction of fruit compression. De Candolle
treated his new genera Archemora DC. (= Oxypolis) and
Tiedemannia DC. (= Oxypolis) in tribe Peucedaneae,
Eulophys Nutt. ex DC. (= Perideridia) in tribe Smyrnieae,
Trepocarpus Nutt. ex DC. in tribe Cumineae W.D.J. Koch,
and Crantzia Nutt. (= Lilaeopsis), with its greatly reduced
vegetative morphology and simple umbels, in tribe
Hydrocotyleae Spreng. As such, the genera we recognise
here as comprising tribe Oenantheae were scattered among
six tribes!
The system of Bentham (1867) departed from all previous
treatments, as he emphasised inflorescence form and the
presence or absence of fruit vittae and secondary ribs. Once
more, Cicuta, Cryptotaenia, and Sium (incl. Berula) were
placed together in Ammieae subtribe Ammiinae Dumort.;
however, Oenanthe, Cynosciadium, and Discopleura (=
Ptilimnium) were treated in Seseleae subtribe Oenanthinae
Benth. Also included in the latter was Crantzia (= Lilaeopsis),
and eight other genera of distant affinity. Eulophus (=
Perideridia) was maintained in Smyrnieae, but Trepocarpus
was placed in tribe Caucalideae Spreng., along with Daucus
and, surprisingly, Bifora. In the system of Boissier (1872),
Oenanthe was placed in tribe Seseleae, away from
Helosciadium, Sium, and Berula of tribe Ammieae. Drude
(1898) maintained two major groups of genera, with Cicuta,
Cryptotaenia, Trepocarpus, and Sium (incl. Berula) in
Ammieae subtribe Carinae Drude, and Oenanthe,
Cynosciadium, Crantzia (= Lilaeopsis), and Discopleura (=
Ptilimnium) in Ammieae subtribe Seselinae Benth. Eulophus
(= Perideridia) was moved to subtribe Carinae, and
Helosciadium was included within an expanded Apium.
Tiedemannia (= Oxypolis) was maintained in Peucedaneae.
The exclusively Mexican genus Neogoezia was placed in
Smyrnieae. Pimenov and Leonov (1993), basing their system on that of Drude, placed all but two of these genera into
their large, heterogeneous tribe Apieae. Neogoezia and
Oxypolis were maintained in Smyrnieae and Peucedaneae,
respectively.
The detailed fruit anatomical studies of Koso-Poljansky
(1916, 1917) only included some of the genera of our
Oenantheae, but even so they were widely scattered among
several tribes (for example, Helosciadium in Aethuseae
Koso-Pol.; Sium in Crithmeae Koso-Pol.; Oxypolis in
Peucedaneae; and Cicuta, Oenanthe, Trepocarpus,
Cyssopetalum Turcz. (= Oenanthe), and Ptilimnium, along
with 12 other genera now considered not very closely related, in Oenantheae Dumort.). Similarly, the novel groupings
proposed by Cerceau-Larrival (1962), from her study of
pollen and seedling morphology, and later adopted by Guyot
(1966, 1971) in his survey of stomatal types, have done little to clarify the relationships among present-day
Oenantheae. Cerceau-Larrival placed Berula, Apium (incl.
Helosciadium), and Sium in her tribe Heteromorpheae,
Cryptotaenia in her tribe Cryptotaenieae, and Oenanthe in a
monotypic Oenantheae. None of her names, however, were
validly published. In summary, no prior taxonomic treatment
has unambiguously grouped together those genera defined
herein as belonging to tribe Oenantheae. In recognising the
Hardway, Spalik, Watson, Katz-Downie and Downie
tribe, Downie et al. (2000b) used Dumortier’s (1827) name,
but its circumscription is radically different from that proposed previously.
Final considerations
In this study, we considered representatives of 19 genera
(beyond those recognised in Oenantheae at the onset of this
study) for possible inclusion in the tribe. Of these, three
(Afrocarum, Daucosma and Trepocarpus) represent the
most recent additions to tribe Oenantheae. Two genera
(Bifora and Cryptotaenia) were confirmed as polyphyletic,
with some of their members having affinities outside of the
tribe. The North American Bifora americana may be recognised as Atrema americana, pending further investigation.
Molecular systematic studies have revealed that many genera of Apioideae are polyphyletic (Downie et al. 2001, Spalik
et al. 2001); thus it is not unrealistic to assume that as material from additional species becomes available for those 16
genera examined for inclusion in the tribe but excluded on
the basis of phylogenetic analysis of ITS data (such as,
Pimpinella and its segregates), some may find affinity within
tribe Oenantheae. Additional genera whose fruit and (or)
vegetative morphologies suggest that they should be examined for possible inclusion in tribe Oenantheae include
Apodicarpum Makino, Asciadium Griseb., Kundmannia
Scop., Ottoa Kunth, and Rutheopsis A. Hansen & G. Kunkel.
Apium sensu lato also merits special consideration. In the
most recent worldwide treatment of Apium, Wolff (1927)
recognised five sections, with one of these comprising those
species recognised in the oenanthoid genus Helosciadium.
Section Apium is taxonomically complex, and given the vegetative similarity of some of its members with those of tribe
Oenantheae, it also deserves further attention. Lastly, while
the ITS region provides phylogenetic resolution in tribe
Oenantheae, additional sources of phylogenetic information
from molecules and morphology, and denser taxonomic
sampling are needed to gain a comprehensive and detailed
phylogenetic understanding of Apiaceae tribe Oenantheae.
Acknowledgements — The authors thank Jean-Pierre Reduron,
Vincent Williams, and Gitte Petersen, and the many botanic gardens and herbaria cited in the text, for generously providing us with
plant material. We also thank Byoung Yoon Lee, Jennifer Anderson,
and Feng-Jie Sun for laboratory assistance, Jill Preston and
Quentin Cronk for ITS data, and Carolina Calviño and Pieter Winter
for comments. Lastly, we thank Patricia Tilney and Ben-Erik van
Wyk for organising this symposium. This paper represents, in part,
a MS Thesis submitted by TMH to the Graduate College of the
University of Illinois at Urbana-Champaign. This work was supported by NSF grant DEB 0089452 to SRD, and by a Herbert
Holdsworth Ross Memorial Award (Illinois Natural History Survey)
and Thesis Support Grants from the University of Illinois.
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