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LC-MS analysis of oils of Monodora myristica and Monodora tenuifolia and isolation of
a novel cyclopropane fatty acid
Al-Tannak, N.F1,2*, Ibrahim Khadra2, Igoli N.P3 and Igoli J.O4
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Kuwait University.
1
2Strathclyde
Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161
Cathedral Street, Glasgow G4 0RE, United Kingdom.
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Centre for Food Technology and Research, Benue State University Makurdi, Benue State
Nigeria.
3
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Department of Chemistry, University of Agriculture Makurdi, PMB 2373, Benue State,
Nigeria.
4
Author and co-authors emails:
Naser Al-Tannak, Email; Dr_altannak@hsc.edu.kw
Ibrahim Khadra, Email: Ibrahim.khadra@strath.ac.uk
Ngozi Igoli, Email: Ngozi_Igoli@yahoo.com
John Igoli, Email: igolij@gmail.com
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*Corresponding author: Dr. Naser Al-Tannak, Email; Dr_altannak@hsc.edu.kw, Tel: +(965)
2463-6070, 0096599139913 Fax: +(965) 2463-6898
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1
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Natural Product Research
Abstract:
Seeds of Monodora myristica and M. tenuifolia were extracted with hexane and the extracts
were subjected to column chromatography, LC-MS and NMR analysis. In addition to masses
of previously isolated compounds, other masses corresponding to unidentified compounds
from the plants were detected. Using 2D NMR techniques, one of the fractions from M.
tenuifolia was characterised as a novel 13-(2-butylcyclopropyl)-6,9-dodecadienoic acid.
However, none of the compounds detected in LC-MS corresponded to the ones previously
identified by GC-MS.
Keywords: LC-MS analysis, NMR, Phytochemical analysis, Chromatography, Nigeria
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1. Introduction
Monodora myristica and Monodora tenuifolia are the only two Monodora species commonly
used as spices in Nigeria. Several phytochemical and GC-MS studies have been carried out
on their seed oils (Ukaegbu-Obi et al., 2015, Agiriga A.N, Siwela M, 2018). Previous studies
have identified some volatile as well as non-volatile compounds (Ngouana T.K, 2015). The
Monodora species are important food spices in most parts of West Africa and Asia.
Monodora myristica Geartn. and Monodora tenuifolia Benth (Simo et al., 2018). (family
Anonnacea) are widely distributed from Africa to Asia, Central and South America and
Australia (Omobuwajo et al., 2003). They are native to West central and East Africa,
extending from Sierra Leone to Uganda, Kenya Congo and Angola. Thus Monodora
myristica is called African nutmeg. It is one of the most important spice trees of the
evergreen forest of West Africa and mostly prevalent in the Southern part of Nigeria
(Ravindra and Kallupurackac, 2001). Almost every part of the tree has economic importance.
Nutritional value of M. myristica and M. tenuifolia centers on their usefulness as seasonings
because of their aromatic flavour. However, the seeds which are embedded in the fruits are of
major interest (Uhegbu et al., 2011, Njoku et al, 2012, Ezenwali et al, 2010). The seeds are
also used in traditional medicine to relieve tooth ache, dysentery, diarrhea, dermatitis,
headache and vermifuge (Ezenwali et al, 2010, Ishola et al., 2016). The plant extracts are
reported to have good anti-oxidant activity and could be important in the management and
treatment of stress induced diseases (Njoku et al. 2012, Akinwunmi and Oyedapo, 2015,
Moukette et al., 2015). Several phytochemical studies to isolate the chemical constituents
have been carried out on these plants and other Monodora species (Onyiriuka and Nwaji,
1972; Spiff et al., 1984; Mayunga et al., 2004, Igoli et al., 2011, Ntie-Kang et al., 2014),
however, the diversity of the compounds isolated imply there could be much more interesting
ones, also taking into account the wide range of bioactivities observed for the plant extracts.
Though GC-MS studies of the seed oils (Adewole et al., 2013) have identified myristicin,
caffeic acid, safrole, methyl eugenol, catechin, elemicin, quercetin, kaempferol, methyl
isoeugenol, eugenol. These studies have not adequately identified all the useful compounds
especially the non-volatile ones in the seed oils or non-polar extracts. LC-MS and NMR
based metabolomics presents a new way of investigating natural products or plant extracts. It
is holistic and unbiased and provides the most functional information about extracts or
natural product mixtures. Dereplication studies (Roessner and Dias, 2013) of plant extracts is
promising as previously known compounds are easily identified based on the intensities of
their NMR or mass spectral peaks. It can also indicate the presence of unknown compounds
based on chemical shifts in NMR and unknown elemental composition in MS. This makes for
further studies of the extracts or the isolation of such novel compounds. However, no LC-MS
studies or column purification which could identify or yield non-volatile and polar
compounds have been reported for the seed oils of these plants. The aim therefore is to
analyse the hexane extracts and purify by column chromatography the seeds oils of M.
myristica and M. tenuifolia, and identify the constituents by LC-MS and NMR spectroscopy.
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2. Results and Discussion
The yield of light brown oils was 42.0 g from M. myristica and 30.0 g from M. tenuifolia.
Column fractions were oily but the more polar ones yielded white solids. The
Characterization of MXHE-29 as 13-(2-butylcyclopropyl)-6,9-Dodecadienoic acid was
achieved by NMR analysis and the fraction MXHE-29 on evaporation yielded compound 1 as
a white solid and it gave a particularly interesting proton nmr spectrum (Figure S1). The
proton spectrum indicated it was a single unsaturated fatty acid containing a cyclopropane
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ring (Marcel et al., 1997). It also showed signals for olefinic (δH 5.37), allylic (δH 2.05) and
bis-allylic (δH 2.79) protons hence the fatty acid chain must be doubly unsaturated (Knothe
and Kenar, 2004, Marcel et al., 1997). A terminal methyl group was observed at 0.90 ppm.
The cyclopropane methylene protons were the most shielded and were observed at -0.31 and
0.58 while the cyclopropane methine protons were identical and observed at 0.67 ppm. The
rest of the proton signals was an envelope of CH2 protons from various parts of the fatty acid
side chain. The 13C-DEPT spectrum (Figure S2) showed one carbonyl carbon at δC 180.4, two
signals for olefinic doubled bonded carbons at 129.9 and 128.0, cyclopropane carbons at 10.9
(methylene) and 15.8 (methine) and a methyl group carbon at 14.1 ppm. Using 2D NMR
experiments (Figures S4- S8) such as COSY, TOCSY, HSQC, HMBC and NOESY, the
structure was deduced as follows: correlations in the COSY spectrum identified the vicinal
protons in the fatty acid chain as well as the germinal ones on the cyclopropane ring. TOCSY
was used to identify the spin systems in the various sections of the chain while HMBC was
used to connect the sections and the positions of the carboxylic acid group and the olefinic
double bonds. The HSQC was used to identify the carbons bearing the protons (Table S2).
The CH3 group must be terminal as it showed correlations to only two carbons (C-17 and C18) in the HMBC and the carboxylic acid group must also be terminal as the two protons H-2
and H-3 that showed correlations to it were vicinal. The olefinic bonds must be on the
carboxylic acid part of the chain as H-2 which showed HMBC correlations to it also showed
correlations to C-4 and its proton H-4 showed correlations to C-6. Similarly, the
cyclopropane ring must be on the terminal CH3 part of the chain as H-17 (attached to C-17)
and H-16 which are vicinal showed correlations to C-20. Correlations from the bis-allylic
protons H-8 confirmed the presence of adjacent double bonds. The linkage of the olefinic
section to the cyclopropane ring was confirmed by 3J correlations from H-12 to C-14 and H20 to C-13. The compound was thus identified to be 13-(2-butylcyclopropyl)-6,9dodecadienoic acid (1) and confirmed by the mass at 306.2 in its LC-MS (Figure S9). The
full chemical shift assignments are given in Table S2 and the structure in Figure S1. The
retention times, masses in EI (positive and negative modes) and inferred compounds from the
masses are given in Tables S3 and 4. This is based on previously isolated compounds from
these plant materials or other Monodora species.
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Previous phytochemical reports on the constituents of the seed oils of these plant
materials were by GC-MS (Esuoso et al., 2000, Adewole et al., 2013). However, GC-MS
reports on the constituents of the seed oils did not identify any of the alkaloids inferred from
the LC-MS results (Tables S3 and S4). The major compounds identified under GC-MS were
terpenes, fatty acids and triglycerols (Esuoso et al., 2000). The compounds identified under
LC-MS in this study were mostly non-volatile and could not have been identified by GC-MS.
The novel fatty acid is quite interesting and cyclopropane fatty acids (CFA) have been
isolated from several sources such as millipedes (Oudejans, 1971), molluscs (Fenical et al.,
1979), molds (Saito and Ochiai, 1998) and a lot of them have been synthesized (Shah et al.,
2014, Arai et al., 1983). CFAs are typically found in microorganisms, seed oils of subtropical plants, protozoa and less commonly, within fats and phospholipids produced by
animals. They are biosynthesized by methylenation of cis-unsaturated fatty acids via
esterification to phospholipids with S-adenosylmethionine and catalyzed by CFA synthases
(Shah et al., 2014).
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3. Experimental
3.1 General Experimental Procedures
The plant seeds were purchased from Markets in Makurdi, Benue State Nigeria and were
identified at the Forestry and Wild Life Department, University of Agriculture Makurdi.
Voucher specimen were deposited at their herbarium and assigned voucher numbers
UAM/FH/0324 for M. myristica and UAM/FH/0325 for M. tenuifolia. LC-MS was carried
out using a Dual source LCMS, an Agilent 6130 with 1200 series LC and UV at 254 nm.
NMR spectra were obtained using a Bruker Avance III (400 MHz) spectrophotometer using
CDCl3 and TMS as internal standard. Spectra were processed using Mnova software. Column
chromatography were carried out using silica gel MN-60 (Macherey-Nagel GmbH & Co.
KG) in glass columns eluting gradient wise with hexane, hexane-ethyl acetate, ethyl acetate
and ethyl acetate-methanol mixtures. TLC analysis was performed on pre-coated silica gel
aluminium plates and spots were visualized using anisaldehyde-sulfuric acid reagent.
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3.2 Extraction of oils
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The ground seeds of M. myristica (200 g) and M. tenuifolia (150 g) were extracted with 500
mL of hexane each. The solvent was removed using a rotary evaporator to yield the oils.
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3.3 Column chromatography
About 3.0 g of the seed oils were separately adsorbed onto silica gel and the resultant slurry
dried as much as possible. Glass columns (45 cm by 2.0 cm internal diameter) were packed
with 150 g silica gel in hexane and allowed to settle. Thereafter, the dry slurries of the oils
were separately loaded onto the packed columns and eluted gradient-wise using 5%
incremental amounts of ethyl acetate in hexane, ethyl acetate and then methanol in ethyl
acetate until 10% methanol in ethyl acetate. About 25 mL fractions were collected to obtain
70 fractions altogether. The fractions were allowed to dry, examined by TLC and similar
fractions were combined and analysed by NMR. Compound 1 was obtained as fraction
MXHE-29 and was not purified further. Its proton NMR showed interesting properties, it was
therefore subjected to further 2D NMR analysis to confirm its structure.
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3.4 NMR analysis
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Extracts and fractions were dissolved in CDCl3 and transferred into NMR tubes. Their proton
spectra were acquired and examined. Compound 1 (fraction MXHE-29) with interesting
proton spectrum was subjected to carbon-13 and 2D (COSY, HMBC, HSQC, DEPT, NOESY
and TOCSY) experiments to deduce their structures.
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3.5 LC-MS analysis
About 1.0 mg of each extract was dissolved in methanol and used for the LC-MS analysis.
LC-MS was acquired using the following parameters: Flow rate was 1.00 mL/min, injection
volume was 10.00 µL. Run time and solvent composition are given in Table S1. For the MS,
ionization mode was MM-ES+APCI in both positive and negative polarity and mass range
was from 100-1000 mass units.
4. Conclusion
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Oils from the seeds of Monodora myristica and Monodora tenuifolia were analysed by LCMS and NMR to identify the constituents. The compounds identified by LC-MS were mainly
alkaloids of the indole and benzoisoquinoline type while the compounds identified by NMR
were long chain unsaturated fatty acids and their triglycerides. A new cyclopropane fatty acid
of the type 20:2 (6, 9) was isolated and identified as 13-(2-butylcyclopropyl)-6,9dodecadienoic acid. This study has also confirmed the presence of a CFA in the seed oil of a
tropical plant.
Conflict of interest
The authors declare no conflict of interest.
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Acknowledgements
Authors are grateful to SIPBS, University of Strathclyde Glasgow, Scotland for the NMR and
LC-MS analysis.
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LC-MS analysis of oils of Monodora myristica and Monodora tenuifolia and isolation of
a novel cyclopropane fatty acid
Al-Tannak, N.F1,2*, Ibrahim Khadra2, Igoli N.P3 and Igoli J.O4
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Kuwait University, Jamal
Abdul Nasser St, Kuwait.
1
2Strathclyde
Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161
Cathedral Street, Glasgow G4 0RE, United Kingdom
Centre for Food Technology and Research, Benue State University Makurdi, Benue State
Nigeria
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Department of Chemistry, University of Agriculture Makurdi, PMB 2373, Benue State,
Nigeria.
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Abstract Seeds of Monodora myristica and M. tenuifolia were extracted with hexane and the
extracts were subjected to column chromatography, LC-MS and NMR analysis. In addition to
masses of previously isolated compounds, other masses corresponding to unidentified
compounds from the plants were detected. Using 2D NMR techniques, one of the fractions
from M. tenuifolia was characterised as a novel 13-(2-butylcyclopropyl)-6,9-dodecadienoic
acid. However, none of the compounds detected in LC-MS corresponded to the ones
previously identified by GC-MS.
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*Corresponding author: Dr. Naser Al-Tannak, Email; Dr_altannak@hsc.edu.kw, Tel: +(965)
2463-6070, 0096599139913 Fax: +(965) 2463-6898
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Table S1. Solvent composition for LC-MS analysis.
Run time (min) Solvent
A
(water
with
5mM Solvent B (Acetonitrile with 5mM
ammonium acetate) %
0.00
95.0
5.0
1.48
95.0
5.0
8.50
0.0
100.0
13.50
0.0
100.0
16.50
95.0
5.0
18.00
95.0
5.0
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ammonium acetate) %
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14
15
16
17
18
19
20
21
22
23
24
25
26
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28
29
30
31
32
33
34
35
36
37
38
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Page 13 of 24
Table S2. Chemical shift assignments for compound 1 in CDCl3
Position
1H
1
-
2
δ ppm (mult, J (Hz)
δ ppm
13C
HMBC (2J, 3J)
COSY
180.4 (C)
-
-
2.36 (t, 7.5)
34.1 (CH2)
C-1, C-3, C-4
H-3
3
1.66 (p, 7.1)
24.6 (CH2)
C-1. C-4
H-2, H-4
4
1.36 (m)
29.4 (CH2)
C-6,
H-5, H-6
5
2.05 (dq, 13.1, 6.6)
27.2 (CH2)
C-6/7,
H-6, H-7
6
5.37 (m)
129.9 (CH)
C-5, C-8
H-5, H-8
7
5.37 (m)
129.9 (CH2)
C-8, C-9
H-5, H-8
8
2.79 (t, 6.3)
25.7 (CH2)
C-6/7, C-9/10
H-7, H-9
9
5.37 (m)
128.0 (CH2)
C-11
H-8, H-11
10
5.37 (m)
128.0 (CH2)
C-11, C-12
H-8, H-11
11
2.05 (dq, 13.1, 6.6)
27.2 (CH2)
C-9/10, C-12
H-10, H-12
12
1.36 (m)
29.4 (CH2)
C-14, C-13
H-11, H-13
13
1.17 (m)
28.8 (CH2)
C-15
H-15, H-17
14
0.67 (p, 5.6, 4.7)
15.8 (CH)
C-15
H-12, H-20
15
0.67 (p, 5.6, 4.7)
15.8 (CH)
C-14, C-20
16
1.17 (m)
28.8 (CH2)
C-15, C-16, C-17, H-15, H-17
iew
ev
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rP
Fo
On
C-20
H-16, H-20
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8
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1.38 (m)
31.9 (CH2)
C-15, C-19, C-20
H-16, H-18
18
1.31 (m)
22.8 (CH2)
C-17, C-19
H-17, H-19
19
0.90 (t, 6.7)
14.1 (CH3)
C-17, C-18
H-18
20
-0.31 (td, 5.3, 3.9)
10.9 (CH2)
C-13, C-14/15
H-14, H-15
0.58 (m)
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Natural Product Research
Table S3. LC-MS retention times and masses for Monodora myristica oil
Retention time m/z (mass)
Inference or Compound*
1.376-1.908
145.2
Indole-5-carbaldehyde
5.020
152.2
Eucalyptol
6-(4-oxobut-2-enyl)-indole or 6-(3-methylbuta-1,3-dien-
10.286-10.801
184.2
1-yl)-indole or 3-Dimethylallylindole
5.050
Fo
236.9
9-Hexadecinal
270.2
Heptadecanoic acid
5.321-5.440
272.2
Liriodenine
8.408
297.0
10.806
340.2
9.323-9.853
367.2
5.384
ee
rP
Stepharine
Laurelliptine
rR
Annonidine
ev
*Based on SciFinder data base hits for compounds previously isolated from Monodora spp
iew
On
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Page 15 of 24
Table S4. LC-MS retention times and masses for Monodora tenuifolia
Retention time m/z
Inference or Compound*
0.607
145.2
Indole-5-carbaldehyde
10.275
184.2
6-(4-oxobut-2-enyl)-indole or 6-(3-methylbuta-1,3-dien1-yl)-indole
5.297
Liriodenine
Kaempferol
297.0
Stepharine
5.934
302.2
Quercetin
10.804
340.2
10.805
341.9
9.326-10.787
367.2
Annonidine
10.804
340.2
Sparsiflorine
10.805
341.9
Magnoflorine or Laurelliptine
12.473
560.4
Cannabisin B
5.325-5.390
306.2
Compound 1
8.405
rP
288.2
ee
6.591
273.8
Fo
Sparsiflorine
Magnoflorine or Laurelliptine
iew
ev
rR
On
*Based on SciFinder data base hits for compounds previously isolated from Monodora spp
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6
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8
9
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1
20
13
9
11
5
7
3
OH
1
15
19
17
Figure S1. Structure of isolated cyclopropane fatty acid.
iew
ev
rR
ee
rP
Fo
On
ly
1
2
3
4
5
6
7
8
9
10
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O
3400
3200
3000
2800
2600
2400
2200
2000
I (t)
2.79
J(6.33)
F (p)
1.65
J(7.10)
H (t)
2.36
J(7.52)
J (m)
5.37
C (p)
0.67
J(5.57, 4.74)
E (m)
1.31
G (dq)
2.05
J(13.07, 6.61)
B (m)
0.58
1800
A (td)
-0.31
J(5.28, 3.90)
K (m)
1.17
1400
1000
800
600
400
200
11.0 10.5 10.0
9.5
9.0
8.5
8.0
7.5
7.0
6.5
6.0
5.5
5.0
f1 (ppm)
D138824.1.fid — Person 100-16 — MXHE-29 — @proton CDCl3 {C:\NMRdata} AIG 27
4.5
4.0
3.5
3.0
2.5
2.0
1.5
1.0
0.5
0.0
iew
ev
rR
Figure S2. Proton spectrum for compound 1 in CDCl3
On
ly
URL: http://mc.manuscriptcentral.com/gnpl
-200
1.00
62.44
1.59
8.69
2.15
0.99
6.46
3.73
6.01
0.76
2.26
0
ee
rP
11.5
1600
1200
D (m)
0.90
Fo
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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5.38
5.37
5.36
5.36
5.35
2.79
2.38
2.36
2.34
2.33
2.08
2.06
2.04
2.02
1.69
1.69
1.67
1.65
1.63
1.61
1.43
1.42
1.41
1.40
1.39
1.38
1.36
1.36
1.35
1.34
1.34
1.33
1.32
1.32
1.31
1.30
1.28
1.20
1.19
1.18
1.17
1.16
1.15
0.93
0.92
0.92
0.91
0.91
0.90
0.89
0.89
0.88
0.87
0.68
0.66
0.65
0.61
0.60
0.58
-0.29
-0.30
-0.31
-0.32
-0.32
Page 17 of 24
-0.5
34.11
31.92
30.18
29.69
29.67
29.63
29.59
29.44
29.35
29.24
29.13
29.06
29.03
28.72
28.70
27.21
25.62
24.67
22.68
15.76
14.06
10.90
130.15
129.96
129.68
128.06
127.89
Page 18 of 24
400000
350000
300000
250000
200000
150000
100000
50000
0
-50000
Fo
-100000
-150000
rP
-200000
-250000
ee
180
170
160
150
140
130
120
110
100
90
f1 (ppm)
D138824.2.fid — Person 100-16 — MXHE-29 — @deptq135 CDCl3 {C:\NMRdata} AIG 27
80
70
60
50
40
30
20
Figure S3. 13-Carbon spectrum for compound 1 in CDCl3
iew
ev
rR
On
ly
1
2
3
4
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7
8
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10
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180.42
Natural Product Research
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10
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10
20
30
40
50
70
80
90
rP
4.5
4.0
3.5
120
130
3.0
2.5
f2 (ppm)
rR
5.0
110
ee
5.5
100
2.0
1.5
1.0
0.5
D138824.3.ser — Person 100-16 — MXHE-29 — @HSQC CDCl3 {C:\NMRdata} AIG 27
Figure S4. HSQC spectrum for compound 1 in CDCl3
iew
ev
On
ly
URL: http://mc.manuscriptcentral.com/gnpl
0.0
-0.5
f1 (ppm)
60
Fo
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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-0.5
0.0
0.5
1.0
1.5
2.5
3.0
3.5
rP
4.0
4.5
ee
5.0
4.5
4.0
5.5
6.0
rR
5.5
5.0
3.5
3.0
2.5
f2 (ppm)
2.0
1.5
1.0
0.5
0.0
D139493.3.ser — Person 100-16 — MXHE-29 — @NOESY CDCl3 {C:\NMRdata} AIG 9
iew
ev
Figure S5. NOESY spectrum for compound 1 in CDCl3
On
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URL: http://mc.manuscriptcentral.com/gnpl
-0.5
f1 (ppm)
2.0
Fo
1
2
3
4
5
6
7
8
9
10
11
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13
14
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-0.5
0.0
0.5
1.0
1.5
2.5
3.0
3.5
4.0
rP
5.0
4.5
5.0
5.5
ee
5.5
4.5
4.0
3.5
6.0
3.0
2.5
f2 (ppm)
2.0
1.5
1.0
0.5
D139493.4.ser — Person 100-16 — MXHE-29 — @TOCSY CDCl3 {C:\NMRdata} AIG 9
rR
Figure S6. TOCSY spectrum for compound 1 in CDCl3
iew
ev
On
ly
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0.0
f1 (ppm)
2.0
Fo
1
2
3
4
5
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9
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30
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50
60
70
90
100
110
120
130
140
rP
5.0
4.5
160
170
ee
5.5
150
4.0
3.5
180
3.0
2.5
f2 (ppm)
2.0
1.5
1.0
0.5
0.0
D138824.10.ser — Person 100-16 — MXHE-29 — @HMBC CDCl3 {C:\NMRdata} AIG 27
rR
Figure S7. HMBC spectrum for compound 1 in CDCl3
iew
ev
On
ly
URL: http://mc.manuscriptcentral.com/gnpl
-0.5
f1 (ppm)
80
Fo
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
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-0.5
0.0
0.5
1.0
1.5
2.5
3.0
3.5
4.0
rP
5.0
4.5
5.0
ee
5.5
ag/John_MXHE-29 —
4.5
4.0
3.5
3.0
5.5
2.5
f2 (ppm)
2.0
1.5
1.0
0.5
rR
Figure S8. COSY spectrum for compound 1 in CDCl3
iew
ev
On
ly
URL: http://mc.manuscriptcentral.com/gnpl
0.0
-0.5
f1 (ppm)
2.0
Fo
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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iew
ev
rR
ee
rP
Fo
Figure S9. LC-MS total ion chromatogram and spectrum for compound 1
On
ly
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7
8
9
10
11
12
13
14
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