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C. sativa (Cannabis) Genome Browser Gateway
 
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About the C. sativa Purple Kush (canSat3) assembly (sequences)
 
cannabis
Cannabis
This project provides the assembled draft genome and transcriptome of Cannabis sativa. The high-potency medical marijuana strain Purple Kush was used for sequencing. The raw assembly data can be downloaded here.

Assembly overview

Minimum scaffold size:     400 bp
Total bases (+gaps)      787.3 Mb
Total bases (-gaps)      534.7 Mb
N50                       16.2 kb
Maximum scaffold size:   565.9 kb
Number of scaffolds:      136,377

 

Cannabinoid pathway genes

The table below lists the genomic scaffolds containing genes involved in cannabinoid biosynthesis. Scroll further down for a graphical overview of the cannabinoid pathways.

Gene  Scaffold  Status 
THCAS scaffold19603 complete
Desaturase   scaffold71447 complete
LOX1 scaffold53609 (part 1)   scaffold12507 (part 2)  
complete
HPL scaffold14797 (part 1)   C31982282 (part 2)   scaffold21904 (part 3)   complete
AAE1 scaffold1750 (1st copy, full)  
scaffold29030 (2nd copy, part1)   scaffold83207 (2nd copy, part2)  
complete, 2 copies
AAE3 scaffold104648 (Original)   scaffold108682 (Copy, processed)   complete, multi-copy
OLS scaffold15717 (1st copy)  
scaffold16618 (2nd copy)  
complete, 2 copies
PT scaffold105794 (part1)   C31963486 (part2)  
scaffold65833 (part3)   scaffold73228 (part4)  
complete
DXS scaffold19453 (part1)   scaffold49473 (part2)   scaffold34324 (part3)   complete
DXR scaffold44357 (1st copy)   scaffold26322 (2nd copy)   complete, 2 copies
MCT scaffold2526 complete
CMK scaffold8634 complete
MDS scaffold10351 complete
HDS scaffold62812 complete
HDR scaffold12000 complete
IPP scaffold73078 complete
GPP (lsu)   scaffold26263 complete
GPP (ssu)   scaffold69393 complete

 

Schematic illustration of the cannabinoid biosynthesis pathways